Package that provides tools for brain Lithium MRI pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

limri.regtools.applywarp(in_file, ref_file, out_file, warp_file, pre_affine_file=None, post_affine_file=None, interp='trilinear', verbose=0)[source]¶

Apply SPM deformation field.

Parameters

in_file : str

filename of input image (to be warped).

ref_file : str

filename for reference image.

out_file : str

filename for output (warped) image.

warp_file : str

filename for warp/coefficient (volume).

pre_affine_file : str, default None

filename for pre-transform (affine matrix).

post_affine_file : str, default None

filename for post-transform (affine matrix).

interp : str, default ‘trilinear’

interpolation method {nn,trilinear,sinc,spline}

verbose : int, default 0

the verbosity level.