Package that provides tools for brain Lithium MRI pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

limri.workflows.registration.li2mni(li_file, lianat_file, hanat_file, outdir, li2lianat=None)[source]¶

Transform the Lithium (Li) data to the MNI space by using intermediate Hydrogene (H) data.

Parameters

li_file : str

path to the Li image.

lianat_file : str

path to the anat image acquired with the Li coil.

hanat_file : str

path of the anat image acquired with the H coil.

outdir : str

path to the destination folder.

li2lianat : 3-uplet, default None

the translation applied on the Li image to compensate for different field of view between the Li and Li anat images (in mm).