Package that provides tools for brain Lithium MRI pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

limri.workflows.maskeyes.li2mnieyes(li2mni_file, outdir, thr_factor=2, bins=300)[source]¶

Detect the eyes in a Lithium MRI image in the MNI space and determine a potential shift as a translation.

Parameters

li2mni_file : str

path to the Li image.

outdir : str

path to the destination folder.

thr_factor : float, default 2

multiply the mean of the second mode in the histogram to get a threshold to detect the eyes in the Lithium image.

bins : int, default 300

the number of bins in the histogram.