Package that provides tools for brain Lithium MRI pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

limri.norm.minmax.norm(source, ref_val, concentration=2.0)[source]¶

Simply normalize the intensities from a reference intensity value and the associated compartment concentration.

Parameters

source : np.ndarray

the image to transform.

ref_val : int

reference value of phantom intensity for the corresponding site.

concentration : float, default 2.

the compartment concentration in milli mols / litre.

Returns

matched : np.ndarray

the transformed source image.