Package that provides tools for brain Lithium MRI pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

limri.norm.minmax.minmax_matching(source, template, mask, concentration=2.0)[source]¶

Adjust the pixel values of a grayscale image such that its dynamic matches that of a target image.

Parameters

source : np.ndarray

the image to transform.

template : np.ndarray

the template image: same dimensions as the source image. In this case the template is a phantom with 1 compartment.

mask : np.ndarray

the mask image: same dimensions as the source image.

concentration : float, default 2.

the compartment concentration in milli mols / litre.

Returns

matched : np.ndarray

the transformed source image.